Based on the gene's FPKM score (from RNA-seq data), representing the transcriptional activity level in specific tissues.
: This often denotes cell-type specificity , a core feature of EAGLE which allows it to distinguish between interactions that only occur in certain tissues. theagle.Cely.1.var
Measures how closely the activity of an enhancer aligns with the expression patterns of a target gene. Based on the gene's FPKM score (from RNA-seq
: Likely represents the first variable or a specific variant in a ranked list of potential regulatory interactions. : Likely represents the first variable or a
While the exact string "theagle.Cely.1.var" may be a specific user-defined variable in a local dataset or script, its "interesting features" are rooted in the EAGLE: Enhancer And Gene Learning Ensemble framework. Key Features of EAGLE Variables
The physical distance between the enhancer and the gene's transcription start site.
These track the number of other enhancers (EWS) or genes (GWS) located in the "window" between the enhancer and gene of interest, accounting for potential interference or competition.